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Data released on August 03, 2012

The genome of Darwin’s Finch (Geospiza fortis).

Li, B; Li, H; Parker, P; Wang, J (2012): The genome of Darwin’s Finch (Geospiza fortis). GigaScience. http://dx.doi.org/10.5524/100040 RIS BibTeX Text

The Medium Ground Finch Geospiza fortis, is one of species of finches first collected by Charles Darwin on the Galapagos islands, and is emblematic for its involvement in the development of evolutionary theory by Darwin and for confirming the action of natural selection. Also know as a Darwin finch, we have sequenced a female individual at 115X coverage of HiSeq data, and produced a high quality draft genome assembly. The genome size of Geospiza fortis is at about 1.07 Gb. The scaffold N50 size of this assembly is at about 5.2Mb and contig N50 size is about 30Kb. A total of 16,286 protein coding genes were annotated. As well as being a model for the study of evolutionary biology, the availability of this genome will also be helpful for the subsequent population studies of this species. As another songbird genome, this will allow researchers to validate the findings of vocal learning gene and behavior interaction that has been carried out in the previously studied zebra finch.

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Related manuscripts:

doi:10.1186/2047-217X-3-26
doi:10.1126/science.1251385
doi:10.1126/science.1253451

Accessions (data included in GigaDB):

GENBANK: AKZB00000000
BioProject: PRJNA156703

Accessions (data not in GigaDB):

SRA: SRA051234

Projects:



Genomic

http://gigadb.org/images/data/cropped/100040_Geospiza_fortis.jpg

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
Geospiza fortis48883Darwin finchmedium ground-finchGeospiza fortis
Displaying 1-1 of 1 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
Geospiza fortisCoding sequenceFASTA6.93 MB2012-08-03
Geospiza fortisAnnotationGFF1.67 MB2012-08-03
Geospiza fortisProtein sequenceFASTA4.59 MB2012-08-03
Geospiza fortisSequence assemblyFASTA284.25 MB2012-08-03
ReadmeTEXT0.39 KB2012-08-03
Displaying 1-5 of 5 File(s).

History:

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