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Data released on August 12, 2015

Supporting data and materials for "NCBI BLAST+ integrated into Galaxy".

Chilton, J, M; Cock, P, J; Grüning, B; Johnson, J, E; Soranzo, N (2015): Supporting data and materials for "NCBI BLAST+ integrated into Galaxy". GigaScience Database. http://dx.doi.org/10.5524/100149 RIS BibTeX Text

The NCBI BLAST suite has become ubiquitous in modern molecular biology and is used for small tasks such as checking capillary sequencing results of single PCR products, genome annotation or even larger scale pan-genome analyses. For early adopters of the Galaxy web-based biomedical data analysis platform, integrating BLAST into Galaxy was a natural step for sequence comparison workflows. Here we provide the command line NCBI BLAST+ tool suite wrapped for use within Galaxy.
The integration of the BLAST+ tool suite into Galaxy has the goal of making common BLAST tasks easy and advanced tasks possible. This project is an informal international collaborative effort, it is deployed and used on Galaxy servers worldwide.

Contact Submitter

Related manuscripts:

doi:10.1186/s13742-015-0080-7

Additional information:

http://www.myexperiment.org/workflows/4584.html

https://registry.hub.docker.com/u/bgruening/galaxy-blast/dockerfile/

https://github.com/peterjc/galaxy_blast

Software

http://gigadb.org/images/data/cropped/100149_cock.png

Funding:

  • Funding body - National Science Foundation
  • Award ID - 1147079
  • Comment - John M. Chilton and James E. Johnson

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
Mixed archivezip5.69 KB2015-05-18
GitHub archivezip788.27 KB2015-05-18
Galaxy workflowGalaxy workflow19.96 KB2015-05-18
ReadmeTEXT0.65 KB2015-05-18
Displaying 1-4 of 4 File(s).

History:

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