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Data released on November 15, 2016

Supporting data for "Genome sequence of a rice pest, the white-backed planthopper (Sogatella furcifera)"

Wang, L; Tang, N; Gao, X; Chang, Z; Zhang, L; Guo, D; Zhou, G; Zeng, Z; Li, W; Akinyemi, I, A; Yang, H; Wu, Q (2016): Supporting data for "Genome sequence of a rice pest, the white-backed planthopper (Sogatella furcifera)" GigaScience Database. http://dx.doi.org/10.5524/100255 RIS BibTeX Text

Sogatella furcifera is an important phloem sap-sucking and plant virus-transmitting migratory insect of rice. Because of its high reproductive potential, dispersal capability and transmission of plant viral diseases, S. furcifera causes considerable damage to rice grain production and has great economical and agricultural impacts. Here we present a total of 241.3 Gb of raw reads from the whole genome of S. furcifera generated by Illumina sequencing using different combinations of mate-pair and paired-end libraries from 17 insert libraries ranging between 180 bp and 40 kbp. The final genome assembly (0.72 Gb), with average N50 contig size of 70.7 kb and scaffold N50 of 1.18 Mb, covers 98.6% of the estimated genome size of S. furcifera. Genome annotation, assisted by eight different developmental stages (embryos, 1st-5th instar nymphs, 5-day-old adults and 10-day-old adults), generated 21 254 protein-coding genes, which captured 99.59% (247/248) of core CEGMA genes and 91.7% (2453/2675) of BUSCO genes.
This dataset includes the final genome assemblye of Sogatella furcifera, annotation of the predicted coding genes, peptide translation of predicted coding genes, and annotation of repeat regions within the genome assembly.

Contact Submitter

Related manuscripts:

doi:10.1093/gigascience/giw004

Accessions (data included in GigaDB):

BioProject: PRJNA331022

Genomic

http://gigadb.org/images/data/cropped/100255.jpg

Funding:

  • Funding body - Chinese Academy of Sciences
  • Award ID - XDB11040400
  • Funding body - Ministry of Science and Technology of China
  • Award ID - 2014CB138405
  • Funding body - National Natural Science Foundation of China
  • Award ID - 31571305
  • Funding body - National Natural Science Foundation of China
  • Award ID - 91231110
  • Funding body - National Natural Science Foundation of China
  • Award ID - 31272011

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
10d113103 white-backed planthopperSogatella furcifera Description:RNA extracted from 20 individuals all ...
Sample source:University of Science and Technology...
Alternative accession-BioSample:SRS1581502
...
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1in113103 white-backed planthopperSogatella furcifera Description:RNA extracted from >500 individuals al...
Sample source:University of Science and Technology...
Alternative accession-BioSample:SRS1581502
...
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2in113103 white-backed planthopperSogatella furcifera Description:RNA extracted from ~200 individuals al...
Sample source:University of Science and Technology...
Alternative accession-BioSample:SRS1581502
...
+
3in113103 white-backed planthopperSogatella furcifera Description:RNA extracted from ~100 individuals al...
Sample source:University of Science and Technology...
Alternative accession-BioSample:SRS1581502
...
+
4in113103 white-backed planthopperSogatella furcifera Description:RNA extracted from ~50 individuals all...
Sample source:University of Science and Technology...
Alternative accession-BioSample:SRS1581502
...
+
5d113103 white-backed planthopperSogatella furcifera Description:RNA extracted from 20 individuals all ...
Sample source:University of Science and Technology...
Alternative accession-BioSample:SRS1581502
...
+
5in113103 white-backed planthopperSogatella furcifera Description:RNA extracted from ~50 individuals all...
Sample source:University of Science and Technology...
Alternative accession-BioSample:SRS1581502
...
+
emb113103 white-backed planthopperSogatella furcifera Description:RNA extracted from >500 embryos
Sample source:University of Science and Technology...
Alternative accession-BioSample:SRS1581502
...
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S.furcifera113103 white-backed planthopperSogatella furcifera Description:Inbred laboratory strains of S.furcife...
Sample source:University of Science and Technology...
Alternative accession-BioSample:SAMN05436725
...
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Displaying 1-9 of 9 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
otherUNKNOWN705.69 KB2016-11-14
otherUNKNOWN705.69 KB2016-11-14
otherUNKNOWN705.69 KB2016-11-14
otherUNKNOWN705.61 KB2016-11-14
otherUNKNOWN3.44 MB2016-11-14
ScriptUNKNOWN24.36 KB2016-11-14
ReadmeTEXT0.87 KB2016-11-14
BLASTUNKNOWN481.92 KB2016-11-14
Coding sequenceFASTA9.34 MB2016-11-14
annotationGFF2.9 MB2016-11-14
Displaying 1-10 of 17 File(s).

History:

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