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Data released on April 05, 2017

Supporting data for "Laboratory X-ray micro-computed tomography: a user guideline for biological samples"

du Plessis, A; Broeckhoven, C; Guelpa, A; le Roux, S (2017): Supporting data for "Laboratory X-ray micro-computed tomography: a user guideline for biological samples" GigaScience Database. http://dx.doi.org/10.5524/100294 RIS BibTeX Text

Laboratory X-ray micro-computed tomography (micro-CT) is a fast growing method in scientific research applications that allows for non-destructive imaging of morphological structures. This paper provides an easily operated "how-to" guide for new potential users and describes the various steps required for successful planning of research projects that involve micro-CT. Background information on micro-CT is provided, followed by relevant set-up, scanning, reconstructing and visualization methods and considerations. Throughout the guide, a Jackson's chameleon specimen which was scanned at different settings is used as an example. The ultimate aim of the paper is make new users familiar with the concepts and applications of micro-CT in an attempt to promote its use in future scientific studies.

Contact Submitter

Accessions (data included in GigaDB):

BioProject: PRJNA347499

Imaging

http://gigadb.org/images/data/cropped/100294.jpg

Funding:

  • Funding body - Universiteit Stellenbosc
  • Award ID - IN-1223567
  • Comment - Dr Anton du Plessis

Samples: Table Settings

Columns:

Common Name
Scienfic Name
Sample Attributes
Taxonomic ID
Genbank Name

Sample IDTaxonomic IDCommon NameGenbank NameScientific NameSample Attributes
three-horned chameleon specimen116114  Trioceros jacksonii Description:A preserved three-horned chameleon spe...
Sex:male
Life stage:adult
...
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Displaying 1-1 of 1 Sample(s).

Files: (FTP site) Table Settings

Columns:

File Description
Sample ID
File Type
File Format
Size
Release Date
Download Link
File Attributes

File NameSample IDFile TypeFile FormatSizeRelease Date 
DirectoryUNKNOWN1.4 GB2017-04-03
DirectoryUNKNOWN4.5 GB2017-04-03
Mixed archivearchive3.66 GB2017-04-03
Mixed archivearchive2.16 GB2017-04-03
DirectoryUNKNOWN5.3 GB2017-04-03
imageTIF1.79 MB2017-04-03
otherUNKNOWN15.09 MB2017-04-03
Mixed archivearchive3.52 GB2017-04-03
Mixed archivearchive1.34 GB2017-04-03
ReadmeTEXT0.48 KB2017-04-03
Displaying 1-10 of 23 File(s).

History:

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